Tools

Available tools and plugins:

Where relevant please cite originating papers (#)
For bugs/issues and queries please contact the lab here

ECM fibre orientation and alignment script

Platform: FIJI / ImageJ

Download Package

 

 

Download v1.07

As published in:
– Conway JRW et al. Scientific Reports (2017) PubMed
– Chou A et al. Gut (2017) PubMed
– Vennin C et al. Science Translational Medicine (2017) PubMed
# Mayorca-Guiliani AE*, Madsen CD*, Cox TR* et al. Nature Medicine (2017) PubMed

Automated birefringence analysis of collagen I using polarised light

Platform: FIJI / ImageJ

Download Package

 

 

Download v2.08

As published in:
– Conway JRW et al. Scientific Reports (2017) PubMed
– Chou A et al. Gut (2017) PubMed
– # Vennin C et al. Science Translational Medicine (2017) PubMed